Bioinformatic design for non-culturable organisms genomes capture/enrichment

Core genome analysis (SNP and cgMLST typing)

De novo assembly

Genome mapping

In silico extraction of data from traditional typing methods (e.g., MLSTs, serótipos)

In silico analysis of antibiotic resistence

Low frequency variant analysis in microbial populations

Metagenomic studies

Mutational analysis of selective gene pressure

Mutational analysis of vacianl antigens

Pan-genome analysis (loci presence/absence and wgMLST profiles)

RNA-seq data differential gene expression analysis

SNP analysis (gene specific and genome wide)

​

​

​